PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2242
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 288aa    MW: 31324.3 Da    PI: 8.7407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2242genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.7e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l+++v+ +G+++W+++++ ++ gR++k+c++rw + 
      Gh_A05G2242 12 KGPWSPEEDEALKRLVQTYGSRNWSLVSKSIP-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP

2Myb_DNA-binding57.62.8e-1866108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +v+a++++G++ W+tIar ++ gRt++ +k++w++ 
      Gh_A05G2242  66 PFTPEEDDTIVRAHTRFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.555762IPR017930Myb domain
SuperFamilySSF466893.56E-329105IPR009057Homeodomain-like
SMARTSM007174.7E-171160IPR001005SANT/Myb domain
PfamPF002497.3E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-261365IPR009057Homeodomain-like
CDDcd001671.77E-161456No hitNo description
SMARTSM007173.0E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.67364113IPR017930Myb domain
PfamPF002498.4E-1566108IPR001005SANT/Myb domain
CDDcd001671.18E-1166109No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MACTRKDVDR IKGPWSPEED EALKRLVQTY GSRNWSLVSK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFTPE EDDTIVRAHT RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMTDDL  120
NDDSPQPLKR SASLNTGNGG SGLYLNPSSP SGSDLSDSSL PVASPITITG SLVPSTQTAS  180
SATDPPTLLT LSLPGSDTSE TTDLGPVSPP GSNSFPSSTL VAEPATVPAL KLHMEKQFLN  240
AELLAVMQEM IRKEVRKYMS GSESNGLCFR TEAIRNAVVK RIGISKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-40111133105C-Myb DNA-Binding Domain
1msf_C1e-40111133105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.151090.0boll| embryo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591701e-69AJ459170.1 Gossypium hirsutum partial myb140 gene, clone pGhMYB140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446627.10.0PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW12e-84MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0D2TSQ20.0A0A0D2TSQ2_G
STRINGPOPTR_0002s12410.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-72myb domain protein 73